funcmasker-flex

Brain masking app using Unet for fetal bold mri

Example usage:

Get a sample subject dataset:

datalad install https://github.com/OpenNeuroDatasets/ds003090.git
cd ds003090/
datalad get sub-2225
cd ../

Run funcmasker-flex on it:

singularity run -e docker://khanlab/funcmasker-flex:latest  ds003090/ funcmasker participant --participant_label 2225 --cores all