funcmasker-flex
Brain masking app using Unet for fetal bold mri
Example usage:
Get a sample subject dataset:
datalad install https://github.com/OpenNeuroDatasets/ds003090.git
cd ds003090/
datalad get sub-2225
cd ../
Run funcmasker-flex
on it:
singularity run -e docker://khanlab/funcmasker-flex:latest ds003090/ funcmasker participant --participant_label 2225 --cores all